CNL Publication Search: Bartol, T. M. Jr.

CNL Publication Index: BibTeX

This database contains all the publications of Terrence J. Sejnowski starting in 1969.

Most of these publications can be downloaded in PDF format. They are made available for individual use only; contact the publisher and the author to receive permission for reproduction in any form.

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Found 19 Articles
Found 1 Edited Book
Found 2 Refereed Conference Proceedings
Found 1 Cited Technical Report
Found 4 Book Chapters
Found 27 Abstracts
Found 54 Total.

Articles

Compans, B. Camus, C. Kallergi, E. Sposini, S. Martineau, M. Butler, C. Kechkar, A. Klaassen, R. V. Retailleau, N. Sejnowski, T. J. Smit, A. B.: Sibarita, J. -B. Bartol, T. M. Jr. Perrais, D. Nikoletopoulou, V. Choquet D. Hosy, E. NMDAR-dependent long-term depression is associated with increased short term plasticity through autophagy mediated loss of PSD-95, Nature Communications, 2, 2849, 2021
Jullie, D. Stoeber, M. Sibarita, J-B. Zieger, H.L. Bartol, T. M. Jr. Arttamangkul, S. Sejnowski, T. J. Hosy, E. von Zastrow, M. A discrete presynaptic vesicle cycle for neuromodulator receptors, Neuron, 105, 1-15, 2020 (PDF)
Ordyan, M . Bartol, T. M. Jr. Kennedy, M. B. Rangamani, P. Sejnowski, T. J. Interactions between calmodulin and neurogranin govern the dynamics of CaMKII as a leaky integrator, PLOS Computational Biology, 16(7):e1008015, 2020 (PDF)
Garcia, G. C. Bartol, T. M. Jr. Phan, S. Bushong, E. Perkins, G. Sejnowski, T. J. Ellisman, M. H. Skupin, A. Mitochondrial morphology provides a mechanism for energy buffering at synapses, Scientific Reports, 9, 18306, 2019 (PDF)
Cugno, A. Bartol, T. M. Jr. Sejnowski, T. J. Iyengar, R. Rangamani, P. Geometric principles of second messenger dynamics in dendritic spines, Scientific Reports, 9, 11676, 2019 (PDF)
Bromer, C. Bartol, T. M. Jr. Bowden, J. B. Hubbard, D. D. Hanka, D. C. Gonzalez, P. V. Kuwajima, M. Mendenhall, J. M. Parker, P. H. Abraham, W. C. Sejnowski, T. J. Harris, K. M. Long-term Potentiation Expands Information Content of Hippocampal Dentate Gyrus Synapses, Proceedings of the National Academies of Sciences USA, pnas.1716189115, 2018 PMCID:PMC5877922 (PDF)
Bartol, T. M. Jr. Bromer, C. Kinney, J. P. Chirillo, M. A. Bourne, J. N. Harris, K. M. Sejnowski, T. J. Nanoconnectomic upper bound on the variability of synaptic plasticity, eLife, 4:e10778, 2015 PMCID:PMC4737657 (PDF)
Bartol, T. M. Jr. Keller, D.X. Kinney, J.P. Bajaj, C. Harris, K.M. Sejnowski, T. J. Kennedy, M.B. Computational reconstitution of spine calcium transients from individual proteins, Frontiers in Synaptic Neuroscience, 7:17. doi: 10.3389/fnsyn.2015.00017, 2015 PMCID:PMC4595661 (PDF)
Regner, B. M. Vucinic, D. Domnisoru, C. Bartol, T. M. Jr. Hetzer. M. W. Tartakovsky, D. M. Sejnowski, T. J. Anomalous Diffusion of Single Particles in Cytoplasm, Biophysical Journal, 104, 1652–1660, 2013 PMCID:PMCID: PMC3627875 (PDF)
Kinney, J. P. Spacek, J. Bartol, T. M. Jr. Bajaj, C. L. Harris, K. M. Sejnowski, T. J. Extracellular sheets and tunnels modulate glutamate diffusion in hippocampal neuropil, Journal of Comparative Neurology, 521, 448-464, 2013 PMCID:PMC3540825 (PDF)
Coggan, J. S. Prescott, S. A. Bartol, T. M. Jr. Sejnowski, T. J. Imbalance of Ionic conductances can explain diverse symptoms of demyelination, Proceedings of the National Academy of Sciences of the United States of America, 107, 20602-20609, 2010 PMCID:PMC2996432 (PDF)
Modchang, C. Nadkarni, S. Bartol, T. M. Jr. Triampo, W. Sejnowski, T. J. Levine, H. Rappel, W. J. A comparison of deterministic and stochastic simulations of neuronal vesicle release models, Physical Biology, 7, 026008, 2010 PMCID:PMC2892017 (PDF)
Sosinsky, G. E. Deernick, T. E. Grenco, R. Buitenhuys, C. H. Bartol, T. M. Jr. Ellisman, M. H. Development of a Model for Microphysiological Simulations: Small Nodes of Ranvier from Peripheral Nerves of Mice Reconstructed by Electron Tomography, Neuroinformatics, 3, 133-162, 2005 (PDF)
Coggan, J. S. Bartol, T. M. Jr. Esquenazi, E. I. Stiles, J. R. Lamont, S. Martone, M. E. Berg, D. K. Ellisman, M. H. Sejnowski, T. J. Evidence for Ectopic Neurotransmission at a Neuronal Synapse, Science, 39, 446-451, 2005 (PDF)
Casanova, H. Berman, F. Bartol, T. M. Jr. Gokay, E. Sejnowski, T. J. Birnmaum, A. Dongarra, J. Miller, M. Ellisman, M. H. Faerman, M. Obertelli, G. Wolski, R. Pomerantz, S. Stiles, J. R. The Virtual Instrument: Support for Grid-Enabled MCell Simulations, The International Journal of High Performance Computing Applications, 18(1) 3-17, 2004 (PDF)
Franks, K. M. Bartol, T. M. Jr. Sejnowski, T. J. A Monte Carlo Model Reveals Independent Signaling at Central Glutamatergic Synapses, Biophysical Journal, 83, 2333-2348, 2002 (PDF)
Franks, K. M. Bartol, T. M. Jr. Sejnowski, T. J. An MCell Model of Calcium Dynamics and Frequency-Dependence of Calmodulin Activation in Dendritic Spines, Neurocomputing, 38-40, 9-16, 2001 (PDF)
Stiles, J. R. Van Helden, D. Bartol, T. M. Jr. Salpeter, E. E. Salpeter, M. M. Miniature endplate current rise times <0 microseconds from improved recordings can be modeled with passive acetylcholine diffusion from a synaptic vesicle, Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, 5747-5752, 1998 (PDF)
Bartol, T. M. Jr. Land, B. R. Salpeter, E. E. Salpeter, M. M. Monte Carlo Simulation of Miniature Endplate Current Generation in the Vertebrate Neuromuscular Junction, Biophysical Journal, Vol. 59, No. 6, 1991 (PDF)

Edited Book

Gupta, S. Kuczewski, R. Bartol, T. M. Jr. Sejnowski, T. J. Lee, R. E. C. Faeder, J. R. Spatial Stochastic Modeling with MCell and Cell Blender Munsky, B. Hlavacek, W. S. (Ed.), Quantitative Biology: Theory, Computational Methods, MIT Press: Cambridge, MA, 2018

Refereed Conference Proceedings

Baden, S. B. Sejnowski, T. J. Bartol, T. M. Jr. Stiles, J. Toward Petascale Simulation of Cellular Microphysiology, Proceedings of the IEEE 7th International Symposium on Bioinformatics and Bioengineering, Oct. 14-17 2007, pp. 628 - 634, 2007 (PDF)
Eagleman, D. M. Coenen, O. J.-M.D. Mitsner, V. Bartol, T. M. Jr. Bell, A. J. Sejnowski, T. J. Cerebellar Glomeruli: Does Limited Extracellular Calcium Implement a Sparse Encoding Strategy?, Proceedings of the 8th Joint Symposium on Neural Computation, The Salk Institute, 2001 (PDF)

Cited Technical Report

Bartol, T. M. Jr. Bromer, C. Kinney, J. P. Chirillo, M. A. Bourne, J. N. Harris, K. M. Sejnowski, T. J. Hippocampal Spine Head Sizes are Highly Precise, BioaRxiv, doi: http://dx.doi.org/10.1101/016329, 2015 (PDF)

Book Chapters

Stiles, J. R. Ford, W. C. Pattillo, J. M. Deernick, T. E. Ellisman, M. H. Bartol, T. M. Jr. Sejnowski, T. J. Spatially Realistic Computational Physiology: Past, Present, and Future Joubert, G. et al. (Ed.), In: Parallel Computing: Software Technology, Algorithms, Architectures & Applications, Elsevier, Amsterdam, pp. 685-694, 2004 (PDF)
Balls, G. T. Baden, S. B. Bartol, T. M. Jr. Sejnowski, T. J. Simulation-driven dynamic clamping of neurons Darema, F. (Ed.), In: Dynamic data driven apllications systems, Kluwer Academic Publishers: Netherlands, 2004 (PDF)
Stiles, J. R. Bartol, T. M. Jr. Monte Carlo Methods for Simulating Realistic Synaptic Microphysiology Using MCell Schutter, E. D. (Ed.), In: Computational Neuroscience: Realistic Modeling for Experimentalists, p. 87-127 CRC Press, 2001 (PDF)
Stiles, J. R. Bartol, T. M. Jr. Salpeter, M. M. Salpeter, E. E. Sejnowski, T. J. Synaptic Variability: New Insights from Reconstructions and Monte Carlo Simulations with MCell W. M. T. C. C. F,. (Ed.), In: Synapses, Baltimore, Johns Hopkins University, 681-731, 2000 (PDF)

Abstracts

Ordyan, M. Bartol, T. M. Jr. Kennedy, M. B. Rangamani, P. Sejnowski, T. J. Interactions between CaM and Ng govern the dynamics of CaMKII as a leaky integrator, Society for Neuroscience Abstracts, 2019
Mendelsohn, R. Bartol, T. M. Jr. Lee, C. Garcia, G. LIU, E. Brockmeyer, K. Bushong, E. A. Phan, S. Perkins, G. Ellisman, M. H. Skupin, A. Sejnowski, T. J. Rangamani, P. Neuronal mitochondria design principles from mouse cerebellum tomography, Society for Neuroscience Abstracts, 2019
Samavat, M. Bartol, T. M. Jr. Bromer, C. Hubbard, D. D. Hanka, D. C. Harris, K. M. Sejnowski, T. J. New structural evidences on the storage capacity of synapses in hippocampal area CA1 and DG in rat, Society for Neuroscience Abstracts, 2019
Sameni, S. Bartol, T. M. Jr. Kennedy, M. B. Sejnowski, T. J. Quantitative MCell model shows competition and dynamic equilibrium within PDZ domain of PSD-95 at the postsynaptic density, Society for Neuroscience Abstracts, 2019
Samavat, M. Bartol, T. M. Jr. Bromer, C. Harris, K. M. Sejnowski, T. J. A tight lower bound on the storage capacity of synapses in the rat middle stratum radiatum in hippocampal area CA1, Society for Neuroscience Abstracts, 2018
Kirk, L. M. Zatyko, K. Bromer, C. Bartol, T. M. Jr. Sejnowski, T. J. Harris, K. Presynaptic ultrastructure changes in response to LTP stimulation in stratum radiatum of hippocampal CA1 neuropil, Society for Neuroscience Abstracts, 2018
Ohadi, D. Schmitt, D. L. Bartol, T. M. Jr. Sejnowski, T. J. Zhang, J. Rangamani, P. Spatial and geometrical aspects of cAMP dynamics in dendritic spines, Society for Neuroscience Abstracts, 2018
Bell, M. Bartol, T. M. Jr. Sejnowski, T. J. Rangamani, P. Spatiotemporal analysis of calcium transients in dendritic spines, Society for Neuroscience Abstracts, 2018
Garcia, J. W Bartol, T. M. Jr. Spencer, D. J. Sejnowski, T. J. An event-driven model of short-term presynaptic dynamics based on detailed molecular simulations with MCell, Society for Neuroscience, 2015 (PDF)
Bromer, C. Bartol, T. M. Jr. Kinney, J. Harris, K. Sejnowski, T. J. Highly precise hippocampal synaptic plasticity, Society for Neuroscience Abstracts, 2014 (PDF)
Kinney, J. P. Bartol, T. M. Jr. Sejnowski, T. J. Influence of Glutamate Transporters on Spillover in a Monte Carlo Model of Hippocampal Neuropil, Society for Neuroscience Abstracts, 30, 2005 (PDF)
Mitsner, V. Eagleman, D. M. Coenen, O. J. D. Bartol, T. M. Jr. Jones, Y. Z. Ellisman, M. H. Sejnowski, T. J. A Monte Carlo Model of Extracellular Calcium Dynamics in the Cerebellar Glomerulus, Society for Neuroscience Abstracts, 30, 2004 (PDF)
Lopreore, C. L. Bartol, T. M. Jr. Sejnowski, T. J. An electrodiffusion model for ion motion in dendritic spines, Society for Neuroscience Abstracts, 30, 2004 (PDF)
Kerr, R. A. Bartol, T. M. Jr. Stiles, J. R. Shutenko, T. Kennedy, M. B. Sejnowski, T. J. Mcell3: a Next-Generation Simulator of Cellular Microphysiology, Society for Neuroscience Abstracts, 30, 2004 (PDF)
Kinney, J. P. Bartol, T. M. Jr. Sejnowski, T. J. Monte Carlo Model of Background Glutamate Spillover in the Hippocampus, Society for Neuroscience Abstracts, 30, 2004 (PDF)
Keller, D. X. Sobczyk, A. Bartol, T. M. Jr. Svoboda, K. Sejnowski, T. J. Refined Monte Carlo Models of NMDA Receptor Signaling, Society for Neuroscience Abstracts, 30, 2004 (PDF)
Lopreore, C. L. Keller, D. X. Bartol, T. M. Jr. Sejnowski, T. J. A Hybrid Electro-Diffusion Model for Neural Signaling, Society for Neuroscience Abstracts, 29, 2003 (PDF)
Mitsner, V. Eagleman, D. M. Coenen, O. J.-M.D. Wood, K. Bartol, T. M. Jr. Jones, Y. Z. Ellisman, M. H. Sejnowski, T. J. Depletion of Extracellular Calcium in the Cerebellar Glomerulus., Society for Neuroscience Abstracts, 29, 2003 (PDF)
Franks, K. M. Weinberg, R. J. Lucic, V. Kennedy, M. B. Bartol, T. M. Jr. Sejnowski, T. J. Anatomical and Functional Microdomains of Calcium and Calcium-Dependent Proteins in Dendritic Spines, Society for Neuroscience Abstracts, 27, 2001 (PDF)
Coenen, O. J.-M. Eagleman, D. M. Mitsner, V. Bartol, T. M. Jr. Bell, A. J. Sejnowski, T. J. Cerebellar Glomeruli: Does Limited Extracellular Calcium Direct a New Kind of Plasticity?, Society for Neuroscience Abstracts, 27, 2001 (PDF)
Esquenazi, E. I. Coggan, J. S. Bartol, T. M. Jr. Shopp, R. D. Sejnowski, T. J. Ellisman, M. H. Berg, D. K. Computer Simulation of Synaptic Ultrastructure and Microphysiology in the Chick Ciliary Ganglion, Society for Neuroscience Abstracts, 27, 2001 (PDF)
Bartol, T. M. Jr. Sejnowski, T. J. Land, B. R. Salpeter, E. E. Salpeter, M. M. Miniature Postsynaptic Currents with Restricted Receptor Areas, Society for Neuroscience Abstracts, 27, 2001 (PDF)
Bartol, T. M. Jr. Sejnowski, T. J. Land, B. R. Salpeter, E. E. Salpeter, M. M. A Sensitivity Analysis of Chemical Kinetics Parameters for the Neuromuscular Junction, Society for Neuroscience Abstracts, 26, 1123, 2000 (PDF)
Franks, K. M. Bartol, T. M. Jr. Poo, M. M. Sejnowski, T. J. High Spatial and Temporal Resolution Estimates of Calcium Dynamics in Dendritic Spines Using Mcell Simulations, Society for Neuroscience Abstracts, 26, 1122, 2000 (PDF)
Franks, K. M. Bartol, T. M. Jr. Egelman, D. M. Poo, M. M. Sejnowski, T. J. Adaptation of CA2 Homeostasis in CA1 Pyramidal Neurons of Calbindin-D28K Knockout Mice, Society for Neuroscience Abstracts, 25, 1989, 1999
Bartol, T. M. Jr. Stiles, J. R. Salpeter, M. M. Salpeter, E. E. Sejnowski, T. J. MCell: Generalized Monte Carlo Computer Simulation of Synaptic Transmission and Chemical Signaling, Society for Neuroscience Abstracts, 22, 1742, 1996 (PDF)
Bartol, T. M. Jr. Sejnowski, T. J. Model of the Quantal Activation of NMDA Receptors at a Hippocampal Synaptic Spine, Society for Neuroscience Abstracts, 19, 1515, 1993 (PDF)